PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0275891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 87aa    MW: 9669.15 Da    PI: 10.0301
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0275891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.32.6e-191984367
                  DUF260  3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
                             a k+lrrkCa+ C++a yf ++q p++fa++hk+FGasnv+kll ++  +++++a+ +++ye ++
  RcHm_v2.0_Chr6g0275891 19 GAFKFLRRKCASYCIFASYFFSQQwPARFAAIHKVFGASNVSKLLLHVLVHDQPTAIVTMAYEVCI 84
                            688*****************99999**************************************886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    
MASRSTSSSD TTRTSSPSGA FKFLRRKCAS YCIFASYFFS QQWPARFAAI HKVFGASNVS  60
KLLLHVLVHD QPTAIVTMAY EVCIVKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-28LBD family protein