PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0275921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bZIP

Protein Properties

Length: 350aa MW: 38283.1 Da PI: 7.334

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0275921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27	1e-08	190	237	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK + eLe+kv++L++e ++L ++ l RcHm_v2.0_Chr6g0275921 190 KRAKRILANRQSAARSKERKVRYANELERKVQTLQTEATTLSAQVTLL 237 9****************************************9888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDSNSNNNSH SFSSSTDIEQ MPETPHRGGS YHRRAHSDFS SFRLPNFDDL LLFDPSDLDL 60 SSFPSPSPVP PPRGTTNSNS NSNSAAAAVP MPIDSDDSSA SRPRPSSSSG PSAAAAHFRS 120 LSVDSDFFDG LALAGDAGGK EVVGGKRAGG GHHRHSNSMD GSFDSELSLD GLKKSITPDK 180 LAELSLIDPK RAKRILANRQ SAARSKERKV RYANELERKV QTLQTEATTL SAQVTLLQRD 240 TTAITAENKE LKIRLQSMEQ QAQLRDALNE KLKEEVERLK IETSQIPHGS GNPFYRGLPP 300 QYAPPQSALH NQLGGSQSQH QHQHQQLHML HNQNVNGQPH PSFMDFNQRA

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDSNSNNNSH SFSSSTDIEQ MPETPHRGGS YHRRAHSDFS SFRLPNFDDL LLFDPSDLDL  60
SSFPSPSPVP PPRGTTNSNS NSNSAAAAVP MPIDSDDSSA SRPRPSSSSG PSAAAAHFRS  120
LSVDSDFFDG LALAGDAGGK EVVGGKRAGG GHHRHSNSMD GSFDSELSLD GLKKSITPDK  180
LAELSLIDPK RAKRILANRQ SAARSKERKV RYANELERKV QTLQTEATTL SAQVTLLQRD  240
TTAITAENKE LKIRLQSMEQ QAQLRDALNE KLKEEVERLK IETSQIPHGS GNPFYRGLPP  300
QYAPPQSALH NQLGGSQSQH QHQHQQLHML HNQNVNGQPH PSFMDFNQRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	151	GGKRAGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43700.1	1e-59	bZIP family protein