PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0276671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 323aa    MW: 36175.8 Da    PI: 4.7511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0276671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-1796146256
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             +++GVr+++ +g+W+AeIrd +     r  r++l++f  aeeAa  +++a  +l+g+
  RcHm_v2.0_Chr6g0276671  96 KFRGVRQRP-WGKWAAEIRDpV-----RkSRVWLETFQMAEEAAMVYDRATIQLRGH 146
                             89*******.**********44.....55*********************9999996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MPSVLFFFNN FFSATKFIFV TDEDATVAVP KIVLISVTDK DAIDTSRDEE EQDQQQQLTK  60
RVINEVRIEE ESEAIRVFLA KNQKQKPKPL PEEKRKFRGV RQRPWGKWAA EIRDPVRKSR  120
VWLETFQMAE EAAMVYDRAT IQLRGHNALT NIIAPPSKIL IPDHDSSSNE SSSINNLSCS  180
NASSSIDHIV VIDEYDSGKE CQSIRSPTSV LSGSDNEWTP GSKEQDETHF LKDYGYCDGV  240
ISPTEAIFFG VTEPILLEEM NLVPETMLVT SNSKTQLLNL EQNLFSGGGM GVQLEGKGGV  300
GSEGVRRKKK EIKTEGIMDI LVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306311RRKKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-29ERF family protein