PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0277601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 361aa MW: 40495.8 Da PI: 9.9898

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0277601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.2e-18	22	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ RcHm_v2.0_Chr6g0277601 22 RGHWRPAEDERLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67 899***************************.*********996 PP
2	Myb_DNA-binding	57.6	2.9e-18	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ RcHm_v2.0_Chr6g0277601 74 RRPFSEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 117 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRQLVEQY GAQNWNSIAE KLQGRSGKSC 60 RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA 120 RRQREQSKLI CGGNKRSYQD FLISSDSISN TSSSISNTFD SRKLKSSTGF DHNQNSTTTS 180 TVFEFRNPGK GRAMSFMESS RPKSSSSHNW NFASMTSSLS IPNSTSSAGF LRGSEISNYK 240 VSECLKGNSD HLFVHRINGQ YSSPAFVYGR YRGSGSSSTF GLPNPRRVNV PINPFGYLSS 300 GTSPLGDIHE QHGSRMILKK EYLRAASSTT FEDHPHPHHD SSIEHNKEVP FIDFLGVGIS 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRQLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA  120
RRQREQSKLI CGGNKRSYQD FLISSDSISN TSSSISNTFD SRKLKSSTGF DHNQNSTTTS  180
TVFEFRNPGK GRAMSFMESS RPKSSSSHNW NFASMTSSLS IPNSTSSAGF LRGSEISNYK  240
VSECLKGNSD HLFVHRINGQ YSSPAFVYGR YRGSGSSSTF GLPNPRRVNV PINPFGYLSS  300
GTSPLGDIHE QHGSRMILKK EYLRAASSTT FEDHPHPHHD SSIEHNKEVP FIDFLGVGIS  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	2e-62	MYB family protein