PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0279801
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 309aa    MW: 35769.1 Da    PI: 6.6102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0279801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.51.9e-47141403128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPt+eel+ +yLk  v gk+l++ ++i+ ++iy+++PwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d
  RcHm_v2.0_Chr6g0279801  14 PGFRFHPTEEELLEFYLKSVVFGKRLRF-DIIEFLNIYRHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTETGFWKATGSD 99 
                             9*************************99.99***************8778899********************************** PP

                     NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++++s    ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl
  RcHm_v2.0_Chr6g0279801 100 RKIVSLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 140
                             ***997666778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MASEMTPPAE LELPGFRFHP TEEELLEFYL KSVVFGKRLR FDIIEFLNIY RHDPWDLPGL  60
SKIGEREWYF FVPRDRKHGS GGRPNRTTET GFWKATGSDR KIVSLSDPKR IIGLRKTLVF  120
YKGRAPRGTK TDWVMNEYRL PDNCKLLKDI VLCKIYRKAT SLKVLEQRAA MEEEMKMGFH  180
ANSPNISASP PTSMDTTMSF SSFQEQEAHQ HHHDLTAQIP IIPTNLKKEL ADDAALTPVE  240
EQRKEEDEQA MEMKEAPTCL HTPFGKDKLP ELLVPKMSMD WTQDQFWAPM NSPWLLPTPY  300
ANILNMELL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-108NAC family protein