PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0282551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 201aa    MW: 23364.8 Da    PI: 10.2338
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0282551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.21.6e-2936123290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                             fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vk+ek+gkw vt++ ++HnH+
  RcHm_v2.0_Chr6g0282551  36 FYDAYATQLGFIMRVDAFRRSLRDGKVVWRRLVCNKEGFRKTRPKR-SENRKPRAITREGCKAMIVVKREKSGKWIVTRFIKDHNHS 121
                             9*******************************************99.9**************************************9 PP

                    FAR1  89 la 90 
                             l+
  RcHm_v2.0_Chr6g0282551 122 LV 123
                             96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MIESSNGKEA ATFEGSSDME PYVGMEFETE EAAKVFYDAY ATQLGFIMRV DAFRRSLRDG  60
KVVWRRLVCN KEGFRKTRPK RSENRKPRAI TREGCKAMIV VKREKSGKWI VTRFIKDHNH  120
SLVVTPANGR RTVILSQTPD EKDMKIRELT AELQRERKRS AAYQEQLDMV LREMEEHSNH  180
LSRNIADIVQ SVKEIESKRI A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-95FAR1 family protein