PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0282571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 190aa    MW: 21700.7 Da    PI: 9.4189
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0282571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.51.4e-2526113189
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             kfY eYA++vGF vr+ + ++   +g++  r++ C+k+g++ ++k +  +e+++r++ r gC+a++ vk +k+gkw+vt+++++HnH
  RcHm_v2.0_Chr6g0282571  26 KFYTEYARRVGFFVRVMQRRRG-IDGRTLARRLGCNKQGFSPNHKGNLGREKKPRVSAREGCNATILVKVDKSGKWVVTRFVKDHNH 111
                             6****************98887.9999************************************************************ PP

                    FAR1  88 el 89 
                             +l
  RcHm_v2.0_Chr6g0282571 112 PL 113
                             99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGDSEGGSVI EPYVGMEFES EEDAKKFYTE YARRVGFFVR VMQRRRGIDG RTLARRLGCN  60
KQGFSPNHKG NLGREKKPRV SAREGCNATI LVKVDKSGKW VVTRFVKDHN HPLIVTANEF  120
STAGDKDKKI EELMMELDHQ DQLCAAYREK LLSFINNVEA ETEELSAKIK AIVDNVRKVE  180
SETQKHSHRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.14e-74FAR1 family protein