PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0282581

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 244aa MW: 28384.8 Da PI: 6.7153

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0282581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.6e-26	68	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY +Y++++GF+vr++++++s++n+ ++ ++fvCskeg+r+++ +++ + ++tr gC a+l+v +++ +kw+vtk+++eHn RcHm_v2.0_Chr6g0282581 68 EFYIAYGRHTGFTVRIHHNRRSRMNNMVIGQDFVCSKEGFRDKKYVYrDNRVLPPPPVTREGCAAMLRVALRDGEKWVVTKFVKEHN 154 6****************************************99882333344899************************** PP FAR1 87 Hela 90 H+l+ RcHm_v2.0_Chr6g0282581 155 HTLM 158 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MESESNNNNN NPFDSDESQS CELPNDIDLC SGEVDKIIEL SNGRSHLMGN PIEPYIGMEF 60 KSRDSAREFY IAYGRHTGFT VRIHHNRRSR MNNMVIGQDF VCSKEGFRDK KYVYRDNRVL 120 PPPPVTREGC AAMLRVALRD GEKWVVTKFV KEHNHTLMSP SKVPWRGSGK TLINEDEKDR 180 KIRELTIELS NERQRCKRKC AAYQDQLNRL LKDIQDHSDH LSERVQDIVK NIRELESEQS 240 EDSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	198	RQRCKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-42	FAR1 family protein