PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0283101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 128aa MW: 14933.7 Da PI: 10.434

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0283101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	27	88	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+t+t+eq+ Leel+++ ++p+a+++++ +++l +++ +++++WFqNrRa+e++ RcHm_v2.0_Chr6g0283101 27 RSSRWTPTPEQIVHLEELYRSgIKTPTAQQIRQVTARLrnygRVEGKNIFYWFQNRRARERQ 88 689***************99************************************97 PP
2	Wus_type_Homeobox	108.1	5.3e-35	28	89	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RWtPtpeQi Leely+sG++tP++++i+++ta+L++yG++e+kN+fyWFQNr+aRerqk RcHm_v2.0_Chr6g0283101 28 SSRWTPTPEQIVHLEELYRSGIKTPTAQQIRQVTARLRNYGRVEGKNIFYWFQNRRARERQK 89 79***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence
MCTYAVVPVT SNEQGRNSSD CSYSHNRSSR WTPTPEQIVH LEELYRSGIK TPTAQQIRQV 60 TARLRNYGRV EGKNIFYWFQ NRRARERQKT RRELVSMHQS DSKQQQQQTL TNNTISCLRE 120 KESAGGII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	3e-25	WOX family protein