PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0284081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 223aa    MW: 25555.1 Da    PI: 9.9195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0284081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-1199140351
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                              +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  RcHm_v2.0_Chr6g0284081  99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 140
                             79**98..47*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MVSLRRRRLL GLCSGISAFL TPLPMFCDNA KPDSVHPRPS KDRNLLDGSN GGKIGPLSST  60
AYGSSLAKEQ PQKYVPGPPI KRRKRHRRKH IHNQEPCLMR GVYFKNMKWQ AAIKVDKKQI  120
HLGTVGSQEE AAHLYDRAAF MCGREPNFEL PEEEKQELMK FKWDEFLAVT RHSINNKKLK  180
KWQWSASEKR SETPPLQDGD WDDKQEVNGL STSEDGEEDT RLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-44ERF family protein