PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0286771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 215aa    MW: 23838.1 Da    PI: 10.0713
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0286771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.11.4e-1865142871
                 E2F_TDP   8 lltqkflkllek..seegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                              l+q+f+kl+ +  s+++ ++l+e+ak L  +          +++k+RRiYDi+NVL++++liek     + k+++rw g
  RcHm_v2.0_Chr6g0286771  65 SLAQNFVKLFVCtgSKSESISLDEAAKLL--PgvgdaqnvsVMRTKVRRIYDIANVLSSVKLIEKthtadTGKSAYRWLG 142
                             47899999887754777************..55688****9999************************999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MATSSYLETP KTSRKSKNMY TWKGFGVVPN ALKVLREEGL DLTPIPVACN NNNNNPLDET  60
KREKSLAQNF VKLFVCTGSK SESISLDEAA KLLPGVGDAQ NVSVMRTKVR RIYDIANVLS  120
SVKLIEKTHT ADTGKSAYRW LGLNERRDGL NLNLEPNLEQ AKKRSFGTDL TNASSKRSKV  180
VEKRVQDQGE VENCNSDGCG AKEIRRATSF VLSLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-42E2F/DP family protein