PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0286911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 505aa    MW: 55523.2 Da    PI: 5.2884
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0286911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.51.7e-34279333155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  RcHm_v2.0_Chr6g0286911 279 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 333
                             79****************************************************8 PP
2Myb_DNA-binding56.94.8e-18281332148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r+rWT+e++e +v+av+qlGg    t+k + + m  +g+t +++ks++qky+
  RcHm_v2.0_Chr6g0286911 281 RMRWTPELHEAFVEAVNQLGGSeraTPKGVLKLMKvEGLTIYHVKSHLQKYR 332
                             89******************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MEARPAIRRS AAKQLSHMGV SGALSSSLPV LQPSSEETYP KLQDTQQVSM ERPVAQAGHL  60
TSNSGVVGHI FSSPSRFSTD LHYSSVSPRE KQSRNNPFIL QSLSSVSMPL PHSSPSGVFQ  120
STASCAYSKE NNGSWGTDSL PGFLDFPVNT PVENSQIESS SCSGILAAED ISKQNDWQEW  180
ANQLITDDDA LTSNWSDLLV DNNVTDLEPK MTYQVPKPSL NFSAQQSQVS QQQPASSREI  240
IPAPSREIIP APSREILPVQ SEDIIAVTTP SSANSAAAKP RMRWTPELHE AFVEAVNQLG  300
GSERATPKGV LKLMKVEGLT IYHVKSHLQK YRTARYRPES SEGSLEKKLT PIEEMTSLDL  360
KTGIEITEAL RLQMEVQKRL HEQLEIQRNL QLRIEEQGKY LQMMFEKQCK SGGDKLNASS  420
SSLDDPSAQP SVAMQVSPDK SELEPSKVEH GEIEADAVKS KVTSVECAEE RIGKQKSPET  480
EAPKDCEPDV CMSSSQPPKR PKIKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-111G2-like family protein