PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0287861
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 287aa    MW: 33019.1 Da    PI: 6.0034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0287861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.8e-50101381129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrF P+deelv++yL kkv++++     ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkatg
  RcHm_v2.0_Chr6g0287861  10 LPPGFRFYPSDEELVCHYLYKKVTNEEALK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTTGYWKATG 95 
                             79***********************99544.78***************88888999******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                             kd+ v++  +g  vg++ktLvfy++rap+g kt W+mhe+rle
  RcHm_v2.0_Chr6g0287861  96 KDRMVVDPgTGDIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                             *******977888***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KVTNEEALKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRMV VDPGTGDIVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKGE MNDNMNLSPH DLMLETKTSC  180
PAALTSPPTH HDQNMHCGYS NQITSFSTTP VPHQSHSHSH SHNNQSNSLL NLLQLSEEKY  240
TDSITEISAK NDDDYGFLWD MNLEENSFET GTLDDMRFEM ENSMVLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-92NAC family protein