PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 150aa    MW: 16937.6 Da    PI: 7.667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-202375156
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++y+G+r+++ +g+++AeIrdps+ng  +r +lg+f taeeAa+a+++a+  ++g+
  RcHm_v2.0_Chr6g0288241 23 TRYRGIRRRP-WGKYAAEIRDPSKNG--ARLWLGTFQTAEEAARAYDRAAFGFRGH 75
                            68********.***********9998..**********************988886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MEGERAESNE RKSKQPIKVR DQTRYRGIRR RPWGKYAAEI RDPSKNGARL WLGTFQTAEE  60
AARAYDRAAF GFRGHLAILN FPNEYQYHNP STSSFVTSNS VSSSSSTSSN SFSSAPADGG  120
MDFGNKEGPV IEFEYLDNMV LEELLEEQKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-30ERF family protein