PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 143aa    MW: 16281 Da    PI: 7.5086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191668156
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++y+G r+++ +gr++AeIrdp+ ng  +r +lg+f+tae+Aa+a+++a+ +l+g+
  RcHm_v2.0_Chr6g0288251 16 TRYRGTRRRP-WGRYAAEIRDPTRNG--ARLWLGTFDTAEQAARAYDRAAFRLRGN 68
                            58********.**********98887..**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MEGKREENKP KVRDQTRYRG TRRRPWGRYA AEIRDPTRNG ARLWLGTFDT AEQAARAYDR  60
AAFRLRGNLA ILNFPNEYQY HNSSTSSFVP SDSTSSSAAI SSAAADDNGK PFCRQESEVI  120
VFEYLDNMIL EELLAIKEDT HGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-17ERF family protein