PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 174aa    MW: 19682.9 Da    PI: 10.3277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-174595255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+G+r+++ +g+++AeIrdp+ ng   r +lg+f+tae+Aa+a+++a+  ++g
  RcHm_v2.0_Chr6g0288261 45 RYRGIRRRP-WGKYAAEIRDPTRNG--VRRWLGTFDTAEQAARAYDRAAFGFRG 95
                            59*******.**********98887..**********************88776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MGTFTMHVTT HILPPNLNSN RSNPATSIME GKREQSKPKV RDQIRYRGIR RRPWGKYAAE  60
IRDPTRNGVR RWLGTFDTAE QAARAYDRAA FGFRGRLAIL NFPNESQYHN SSTSSFVTST  120
SPPSSSSFSS AAANIEKNFG NEESGVIEFE YLDNMILEEL LATQESQGKR KVQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-22ERF family protein