PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 150aa    MW: 16271.9 Da    PI: 7.5209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-192073256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr+++ +g+++AeIrd +  g   +r +lg+f taeeAa+a++ a+ +++g+
  RcHm_v2.0_Chr6g0288271 20 KYRGVRRRP-WGKFAAEIRDSTRHG-EgARLWLGTFNTAEEAARAYDSAAFSMRGA 73
                            8********.**********43343.36*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MEGDSSRGSK AKQGGQKDVK YRGVRRRPWG KFAAEIRDST RHGEGARLWL GTFNTAEEAA  60
RAYDSAAFSM RGALAILNFP REHGLPDSSA ASAVSSPSSS SSSPTSISAS SSTLQNVEGT  120
TRTEPRREVF EIECLDDKVL EDLLDFDRKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-27ERF family protein