PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0288831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 187aa MW: 20498 Da PI: 6.4869

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0288831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.9	8.2e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkCa++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dPvyG+v++i++lqqq RcHm_v2.0_Chr6g0288831 8 PCGACKFLRRKCARGCIFAPYFCDEQgATHFAAIHKVFGASNVSKLLSQLPVNDRCRAALTISYEAQARVQDPVYGCVSHIFALQQQ 94 7***********************89******************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+a+la++ke+ RcHm_v2.0_Chr6g0288831 95 VLNLQAQLASAKEQ 108 ********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MAGSAGSPCG ACKFLRRKCA RGCIFAPYFC DEQGATHFAA IHKVFGASNV SKLLSQLPVN 60 DRCRAALTIS YEAQARVQDP VYGCVSHIFA LQQQVLNLQA QLASAKEQAA KSYSTGSDNS 120 MNPSWLQYSE NLNMTNQQQP ISFGNDENFM VPEVLNDIYG SFGVSSNSMI SLDHMQTNSM 180 QWSFDQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	6e-55	LBD family protein