PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0288841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 274aa MW: 30391 Da PI: 6.9253

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0288841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.9	8e-39	53	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq RcHm_v2.0_Chr6g0288841 53 PCGACKFLRRKCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQ 139 7*********************9989******************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+a+la+lk++ RcHm_v2.0_Chr6g0288841 140 VVNLQAQLASLKDQ 153 *******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MITSTLPLVF IYMVKRMLAA NKYLQLRESR NHTKTPPINQ EILIKIMTGS GSPCGACKFL 60 RRKCVRGCIF APYFCHENGA THFAAIHKVF GASNVSKLLA HLPVSDRCEA AVTISYEAQA 120 RLQDPIYGCV SHIFALQQQV VNLQAQLASL KDQASQSFVN GSAAVANPNE NWFPDLENSS 180 NSVPQVNSNY HINNGGTTSY YENGIMSSNS IGSSNNDQNS GIRDENASYG SFEEVSPSLS 240 SFNMQMNNRQ YWGNYDRDVD ELQSMAFSYV DQHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-58	LBD family protein