PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 153aa    MW: 16650.5 Da    PI: 8.8312
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.6e-3844131187
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq
  RcHm_v2.0_Chr6g0288851  44 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQ 130
                             7*************************99*********************************************************** PP

                  DUF260  87 l 87 
                             +
  RcHm_v2.0_Chr6g0288851 131 V 131
                             8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MCSQSPHFLL HLPLTSFVQH FLVHPSTMAS GSTGSSGTTG TGSPCGACKF LRRKCASDCI  60
FAPYFCSEQG PARFAAIHKV FGASNVSKLL LHVPVHDRCE AVVTIAYEAQ ARIRDPVYGC  120
VAHIFALQQQ VFVLVLVLAK YKTLFSRNCF LIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-52LBD family protein