PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 209aa    MW: 23234.1 Da    PI: 5.1259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000233557123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C  C++ F++   L  H++ H
  RcHm_v2.0_Chr6g0288891 35 YECVFCKRGFTTAQALGGHMNIH 57
                            99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MESQSNHRHD EEDSKSSSDE QAEDLNDDLG TGRSYECVFC KRGFTTAQAL GGHMNIHRKE  60
RAKPRPTSAP TSIASKAADE HVSDLMRSYR SLQSYTGPHF ATAPDVDVNY RTYIPAPTWI  120
VGQAHSDHEE LCARNYQLRH QNLFATDDDC PNWRSGSGLS LGIGPSAHDD DDEDHVGHDH  180
HKKEIERING ACSSEGDGLD LELRLGHDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-12C2H2 family protein