PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0288901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 222aa MW: 24916.1 Da PI: 9.3983

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0288901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H RcHm_v2.0_Chr6g0288901 25 FTCSFCKREFRSAQALGGHMNVH 47 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MDCVKLRFGR EEDLTDISPW TAKNFTCSFC KREFRSAQAL GGHMNVHRRD RAKLRLLPPN 60 SILSSSEYSP NPTPTPNPNP NPNPKSYFSP SPSSSSLSGA NKYLPHLLSP RSTYVSTPSS 120 GTSDHENKKL MIFDSGSHQH HVPAFLNPKK RIKGGSGLDY EFGDLLNGFA GNAQKHHLND 180 DFKVVRKDEK HINMIRVDLD MGLLIKDPNK EELDLELRLG HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	3e-20	C2H2 family protein