PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0289271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 212aa    MW: 23205.6 Da    PI: 10.9843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0289271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-1875123355
                     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GVr ++ +gr++AeIrd +     +  r +lg+f+taeeAa+a++aa++ ++g
  RcHm_v2.0_Chr6g0289271  75 FRGVRKRP-WGRYAAEIRDpW-----TkSRKWLGTFDTAEEAARAYDAAARGFRG 123
                             8*******.**********88.....44**********************87765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MALDAMHTSL HSLAADPPPP PPAKASRGAM RSAHVRGAMK KKAAQDGGEM KKEKEEPAKG  60
GGGGRRSRSS KEGSFRGVRK RPWGRYAAEI RDPWTKSRKW LGTFDTAEEA ARAYDAAARG  120
FRGVRAKTNF ENPAPPKQHA LLIGGKEVLW TPPVRKNDPV PAPAAPVRSE YKGYKLENLG  180
PVVSEQEKKM KLAAESRKKP FQFDLNLPAP SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16582RRSRSSKEGSFRGVRKRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-18ERF family protein