PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0289921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 457aa MW: 50252.5 Da PI: 8.6181

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0289921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RcHm_v2.0_Chr6g0289921 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	11.7	0.0008	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ RcHm_v2.0_Chr6g0289921 164 WKCDKCSKIYAVQSDWKAHSKTC 186 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MFPSVAAMSN STSLSTEEAA SVSSGSRLPD HFACLNPLSV STIISSPLDH QQPPQKIKKK 60 RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSS 120 KDLIKKRAYV CPEPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KIYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSASQLAIA TTPQISLFPF 240 PNHSHFTNPP PLPFTTLSPW DPPHNPNPNT TQNPLHHHVK PEETHHHFPL NPTLFQETPS 300 PQHKTLITSP FQHLHVSTQP TSSVATSAHL SATALLQKAA TIGASAAGQQ QSQSAGLAEF 360 GTLGGFTSGE LTTWQKTDRL TRDFLGLTSA DGNGCDHGNG AVNVVNDMLT YAGGAVEFQH 420 YHHDQRLRGH HALLKPQGFG FAETTASDTW GIVDQDI

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MFPSVAAMSN STSLSTEEAA SVSSGSRLPD HFACLNPLSV STIISSPLDH QQPPQKIKKK  60
RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSS  120
KDLIKKRAYV CPEPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KIYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSASQLAIA TTPQISLFPF  240
PNHSHFTNPP PLPFTTLSPW DPPHNPNPNT TQNPLHHHVK PEETHHHFPL NPTLFQETPS  300
PQHKTLITSP FQHLHVSTQP TSSVATSAHL SATALLQKAA TIGASAAGQQ QSQSAGLAEF  360
GTLGGFTSGE LTTWQKTDRL TRDFLGLTSA DGNGCDHGNG AVNVVNDMLT YAGGAVEFQH  420
YHHDQRLRGH HALLKPQGFG FAETTASDTW GIVDQDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	C2H2 family protein