PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0290001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 117aa    MW: 13164.4 Da    PI: 8.9455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0290001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000541733218
                            EETTTTEEESSHHHHHH CS
                 zf-C2H2  2 kCpdCgksFsrksnLkr 18
                            +C+ Cg sF+ + +Lk+
  RcHm_v2.0_Chr6g0290001 17 TCEECGASFKKPAYLKK 33
                            6*************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MEMAKAGGEV VVEKSNTCEE CGASFKKPAY LKKRMQSHSP ELGVTLLWRD TADYMSGCMR  60
IAEGKVSNCL IGSEISGILP NPNQWHFRVG YKVASRFFFF ILFIRVLLYS FSLLSVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-09C2H2 family protein