PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0292971

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 464aa MW: 49723 Da PI: 8.846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0292971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.6e-11	46	72	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ RcHm_v2.0_Chr6g0292971 46 PGVPNCVYYMRTGFCGYGVRCRYSHPR 72 5789*********************96 PP
2	zf-CCCH	40.1	6e-13	93	117	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ RcHm_v2.0_Chr6g0292971 93 EPVCQYYLKTGTCKFGASCKFHHPK 117 789********************96 PP
3	zf-CCCH	37	5.8e-12	138	163	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ RcHm_v2.0_Chr6g0292971 138 GENECSYYLKTGQCKFGLTCKFHHPQ 163 6789********************97 PP
4	zf-CCCH	35.8	1.3e-11	294	320	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ RcHm_v2.0_Chr6g0292971 294 PGEPECQYYLRTGDCKFGPSCRYHHPR 320 5799*********************96 PP
5	zf-CCCH	34.1	4.7e-11	343	366	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C f++++G+Ck+G++CkF H++ RcHm_v2.0_Chr6g0292971 343 QPCTFYLQNGHCKFGSSCKFDHPM 366 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MEQLYGRSPA RNGSNPEWSS TAGETGLEEQ MWQFGLTSTE SYPERPGVPN CVYYMRTGFC 60 GYGVRCRYSH PRDRAAVVAA VRATGDYPER VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG 120 GSLTRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGLTCKFH HPQPAGTTVP ASAPQFYPSV 180 QSPSVPMPEQ FGGQSTGLRV ARPQLLPGSY VQGAYGPVLI PPGVVPIPSW NPYSAPLSPV 240 LSPGAQPTVG ATSLYGLTQL SSPTHALARP YTSVPSSVGP SSSSPNEQAF PERPGEPECQ 300 YYLRTGDCKF GPSCRYHHPR DRIAPRTNCL LSTVGLPLRP GAQPCTFYLQ NGHCKFGSSC 360 KFDHPMGTMR YSPSASSLDM PVAPFPVGSL LGTLAPSSSS SELRPELISA RMPSSGNPSS 420 SSVGLIFSQS GSVSLADVQL SSQTSVPISN SRSTRQGGEV RRSS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MEQLYGRSPA RNGSNPEWSS TAGETGLEEQ MWQFGLTSTE SYPERPGVPN CVYYMRTGFC  60
GYGVRCRYSH PRDRAAVVAA VRATGDYPER VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG  120
GSLTRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGLTCKFH HPQPAGTTVP ASAPQFYPSV  180
QSPSVPMPEQ FGGQSTGLRV ARPQLLPGSY VQGAYGPVLI PPGVVPIPSW NPYSAPLSPV  240
LSPGAQPTVG ATSLYGLTQL SSPTHALARP YTSVPSSVGP SSSSPNEQAF PERPGEPECQ  300
YYLRTGDCKF GPSCRYHHPR DRIAPRTNCL LSTVGLPLRP GAQPCTFYLQ NGHCKFGSSC  360
KFDHPMGTMR YSPSASSLDM PVAPFPVGSL LGTLAPSSSS SELRPELISA RMPSSGNPSS  420
SSVGLIFSQS GSVSLADVQL SSQTSVPISN SRSTRQGGEV RRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein