PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0293161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 1022aa MW: 113464 Da PI: 8.626

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0293161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	7.1e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g++ +qV+ +F +R + +k RcHm_v2.0_Chr6g0293161 65 KRPRDLLNPKAIKYMQSVFSIKDAITKKESREISALFGVSVSQVRDFFNSQRSRVRK 121 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence
MEDLSELKIG NSVESFHKFV DSQRELFHRQ IDELQKIVVT QCKLTGANPL SQEMAAGALS 60 INIGKRPRDL LNPKAIKYMQ SVFSIKDAIT KKESREISAL FGVSVSQVRD FFNSQRSRVR 120 KIVQLSREKA IRSTEHKELL EGVPTISDPL MPTSSDPLIP INPLPLNTID PSNVEDAPSC 180 STQDDTLSGL DDVDKHFVEN IFNLMRKEET FSGQVKVLEL ILRIQNSSVL CWFLTKGGVM 240 ILVTWLTQAA DEEQTSVLLI ILKVLCHLPL SKALPVHMSA ILQSVNRLRF YRTPEISNRA 300 RVLLSRWSKS LARSQALKKP NGMKTSNDSQ ELALLKRSID EAIGDDPWNS NGDVNEDILA 360 LPFESADKLR KLESSEPVKL LTASSDDSNK KHILGVSSSQ FRGRRKVQLV EQPGQKTAGR 420 SSQVAKTTPV SQARPMSVDD IQKAKLRAQY MQSKYGKSAS SNENKEVKAE GVNIPPIAQA 480 SILPVVPNVP VQSSIEESKK PVTLPLKERE TLDISLQPIG SFQTIAPKLK TDMKEHIWEK 540 CRRVQVPWKT PPEIKLNPGW RVGGGENGKE MEVQKNRNHR EQETIYKTFK EIPPNPKEPW 600 DIEMDYDDSL TPVIPTEQPP DTDCTETQPS HSREVNNAAE TLVVPSQGVN SVVSMVPLTN 660 MASSTAEPDL ELLAVLLKNP ELVFALTSGQ AGNLSSEDTV KLLDMIKAGG AGFAGNLNGL 720 ASKMEEKVEV SLPSPTPSSN PGTSGWRPEA TRNAFSQQNS MQNRVSPGYG SPAMAANSNL 780 VLSQLPSALT SPLLPRLSAA QQAVPAYSPE HVHQFPHTTT VSHLQHNYSN MAVPSVWGES 840 TSNGKPGPSY NSYNVAPERQ PNSLPPPFSS NLTHQQRRPP QPLQQQTHYS DSPHYSESPY 900 FSKPPTGKPV PLSDSWRAGR QGNYHYLENQ NQYYNAPSYG GLQQQPQLRS GPPYEGNEYA 960 SNGGGFESWS PPEDSPARNA DYNMHGRNAY RPTDRSRQRN TQTPGYRDYS RQGHRWPDRG 1020 RH

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence

MEDLSELKIG NSVESFHKFV DSQRELFHRQ IDELQKIVVT QCKLTGANPL SQEMAAGALS  60
INIGKRPRDL LNPKAIKYMQ SVFSIKDAIT KKESREISAL FGVSVSQVRD FFNSQRSRVR  120
KIVQLSREKA IRSTEHKELL EGVPTISDPL MPTSSDPLIP INPLPLNTID PSNVEDAPSC  180
STQDDTLSGL DDVDKHFVEN IFNLMRKEET FSGQVKVLEL ILRIQNSSVL CWFLTKGGVM  240
ILVTWLTQAA DEEQTSVLLI ILKVLCHLPL SKALPVHMSA ILQSVNRLRF YRTPEISNRA  300
RVLLSRWSKS LARSQALKKP NGMKTSNDSQ ELALLKRSID EAIGDDPWNS NGDVNEDILA  360
LPFESADKLR KLESSEPVKL LTASSDDSNK KHILGVSSSQ FRGRRKVQLV EQPGQKTAGR  420
SSQVAKTTPV SQARPMSVDD IQKAKLRAQY MQSKYGKSAS SNENKEVKAE GVNIPPIAQA  480
SILPVVPNVP VQSSIEESKK PVTLPLKERE TLDISLQPIG SFQTIAPKLK TDMKEHIWEK  540
CRRVQVPWKT PPEIKLNPGW RVGGGENGKE MEVQKNRNHR EQETIYKTFK EIPPNPKEPW  600
DIEMDYDDSL TPVIPTEQPP DTDCTETQPS HSREVNNAAE TLVVPSQGVN SVVSMVPLTN  660
MASSTAEPDL ELLAVLLKNP ELVFALTSGQ AGNLSSEDTV KLLDMIKAGG AGFAGNLNGL  720
ASKMEEKVEV SLPSPTPSSN PGTSGWRPEA TRNAFSQQNS MQNRVSPGYG SPAMAANSNL  780
VLSQLPSALT SPLLPRLSAA QQAVPAYSPE HVHQFPHTTT VSHLQHNYSN MAVPSVWGES  840
TSNGKPGPSY NSYNVAPERQ PNSLPPPFSS NLTHQQRRPP QPLQQQTHYS DSPHYSESPY  900
FSKPPTGKPV PLSDSWRAGR QGNYHYLENQ NQYYNAPSYG GLQQQPQLRS GPPYEGNEYA  960
SNGGGFESWS PPEDSPARNA DYNMHGRNAY RPTDRSRQRN TQTPGYRDYS RQGHRWPDRG  1020
RH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein