PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0293241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 184aa    MW: 20861.1 Da    PI: 5.7361
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0293241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.32.6e-5437132297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy eplk yl+
  RcHm_v2.0_Chr6g0293241  37 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYSEPLKRYLN 123
                             89************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             ++relegek
  RcHm_v2.0_Chr6g0293241 124 RFRELEGEK 132
                             *******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MEMVDNTGNN NNISPDSREG FNYNFAGDRH HHDEVIKEQD RLLPIANVGR IMKQILPPNA  60
KISKEAKETM QECVSEFISF VTGEASDKCH KEKRKTVNGD DICWALSTLG FDDYSEPLKR  120
YLNRFRELEG EKAQQSKANS GGEDQRNEEA EVSPTRASTT SSSNPLLKFN MINERGNSSI  180
SRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-61NF-YB family protein