PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0294441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 309aa    MW: 34397.7 Da    PI: 5.2622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0294441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1977125355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  RcHm_v2.0_Chr6g0294441  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 125
                             9*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MCGGAIIAEF IPRNRSRVSG SEIWPNSSFA KLNPDNFFNL DLTAPTHKDS RPSKTSQPFS  60
GGLEEQKPAK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA  120
RKIRGKKAKV NFPNEDDQEY HPHQTYLKNS NPHPFQPNTG NFNDNHIPKG FDMGFGYDLN  180
QSAAFPSNSN GSNGFNSVVV NTDPIVVSGE ENSGSGSEGT YSSTGLVGKE KEESTQSNAI  240
VAAEENEVQK LSEELLAFEN YMKFYQIPYL DGQSTAPVNP AQQESMVGDL WSFDDENDNV  300
PASVTSSFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-33ERF family protein