PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0296281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 289aa    MW: 32956.3 Da    PI: 8.1656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0296281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-5281321128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeelv++yL++k++++++++  +i+e+d+yk++Pw+Lp  +  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg
  RcHm_v2.0_Chr6g0296281   8 LPPGFRFHPTDEELVKHYLCRKCQSQPISV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGRGYWKATG 93 
                             79****************************.88***************6555679******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk++     + vg+kk Lvfy g+ap+gekt+W+mheyrl
  RcHm_v2.0_Chr6g0296281  94 ADKPIGL--PKPVGIKKALVFYAGKAPRGEKTNWIMHEYRL 132
                             *****99..789***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MSSSELQLPP GFRFHPTDEE LVKHYLCRKC QSQPISVPII AEIDLYKYDP WELPGLALYG  60
EKEWYFFSPR DRKYPNGSRP NRAAGRGYWK ATGADKPIGL PKPVGIKKAL VFYAGKAPRG  120
EKTNWIMHEY RLADVDRTPR KRNSLRLDDW VLCRIYNKKG TAEKQQPLIS RKAVSGGSEF  180
EDVKPENLMA CPPPPAVAAT RPSEYVYFDN SDSVPRLHTD SSCSEQVVSP EFTSEVQSEP  240
KWKEWEKALD FPYNYGDATV ENGGFGAQFQ GGNQMSPLQD IFMYLQKPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-149NAC family protein