PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0296731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23680.1 Da    PI: 9.5026
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0296731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien+snrqvt+skR+ngi+KKA+E+ vLCda+v++ii++s+gk+ ey+s
  RcHm_v2.0_Chr6g0296731  9 KRIENSSNRQVTYSKRKNGIIKKAKEITVLCDAKVSLIIIASSGKMVEYCS 59
                            79***********************************************96 PP
2K-box79.49.1e-2772169198
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             y+++sgk+l++ak+e+l++e++++kk ++ +q e+Rhl+Ged++sL++ +L+ Le+++e++l +iR++ ++++ +  e+ +  e+e+
  RcHm_v2.0_Chr6g0296731  72 YHSQSGKRLWDAKHENLCNEVDRVKKDNDGMQIELRHLKGEDITSLNHVDLMALEEAIENGLASIRDRMSKYMDAVRENNRALEDEN 158
                             78999********************************************************************************** PP

                   K-box  88 qeenkaLrkkl 98 
                             ++   +++k++
  RcHm_v2.0_Chr6g0296731 159 KRLAYQMHKMM 169
                             99999888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRKNGIIK KAKEITVLCD AKVSLIIIAS SGKMVEYCSG  60
PQETRMKILD KYHSQSGKRL WDAKHENLCN EVDRVKKDND GMQIELRHLK GEDITSLNHV  120
DLMALEEAIE NGLASIRDRM SKYMDAVREN NRALEDENKR LAYQMHKMMK YEENLRDMNY  180
NNNNQIPFAL RVQPNQPNLH DRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-76MIKC_MADS family protein