PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0296771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 2107aa MW: 232203 Da PI: 9.3534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0296771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	1981	2002	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tGtC+ G++Ck +H++ RcHm_v2.0_Chr6g0296771 1981 CQTFEETGTCPQGPKCKLHHPK 2002 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2107 aa Download sequence
MVVEIDLSFL DHEKLTVYPG LRWESETAGQ DKTKLRKLRT KTKKKIRRRR RRKKTKKSRE 60 PNQPEIPDLS LSSWTSLSTF TTIQGTLLPP PPLTLISQTT LTAPPTTTTT ATLRLLLPQP 120 SPHSSAHNPP PPSNPYPLLR RHHIPKGPPS PPPHRFRSFQ NLLPRTTHRP LPLDSDRPRH 180 RLYLESGPDY RDRSRNYSPR DYDRELHKPY RRDPDGGGAR FRSEYEEQRD RRVDDGYRRR 240 SSNHETTTFR EVELQDSGSG CYDESAYEEL LKSGRRYEAY EIQRWGLERA QSEEDLYDPF 300 ELDEHDEEDR IVSDKRDYYG SESGRNSSTS RWKQIQKKSA LLRLQTPKAR DRNYSAYYDS 360 SGSGGSFRGK EQYEYEYSGH GRKDAVEEER RGGGGEERGQ QQRGGSSPLD LDVSFKSNSL 420 VAKPVRTRDE KRGSVSDMDC SESPPAKPFC ADVVNLDSLA LVSNKTSSPG KEAMKLKGQV 480 TTSGMNSQPC SVVTDDAFVK SEVETAPKGK ILHKDGKDVG SSQKSSPNVS KKTKVVKKIV 540 AKKTVKKVTN PPTSQPESKI DEPGTSTVHS LFAGTGKGET SSISDPCPND LHVLPVDKEV 600 EGSQPNVLSD EYGTVLNSCS KNIGNNSSAN LGSLSPAEIN TDQKHPLNVD TPVKGLLTIS 660 NFNSNATDSI KVASCPETGG VVDVSKSICQ SGNILLVDKV VQKESSQAML AVEGNLSSGF 720 LNSDKMHELT NVKGSEHGAE TLEKLSHQEI IVPDVGTVDA VSEQPCRYQL PTSLQNGGVV 780 EELPKAISSA ENNMAVGLSS SGETKAVRSK IGRRTRWDSD EVYVKKDKSI TVSNGGNTNS 840 FGKQSSPDCD SRSFEICATE RSPNIPKSGG DTHSVTPMIQ KKRKVKTQLD FSRISDTCVD 900 PVNVSPRKDA PDTTVSSFLK DPSHAEVSVS GVQKLDMGSQ PGNDWVSVLN GKSSVNGFSD 960 TKLSATIDAN YDTNETSPEY LKRRKVSGTH LVLTSAQTNG GPANKSTSYI QESSTHNDVP 1020 TYQADKGASS SIGSQCATSN LIPSPEEINV YLEDIMAAVS SDTVAAARDS FTNDDMKIKH 1080 QGIDSSSVSE GSGIPHMQIL CPLQSQNEDK EDGTEVMVVN NHHLDILDID GSHEKDFDVC 1140 ATNEHIMVQG ETAPCTIHSE LQPADLGINS FSTNIQSDYL CVKDKLPFVP SCLLSIANGN 1200 EVTSTNSIDE GMKSVSDTLS DTGTPETSTS ITDVHMLICN PSVIKSFDEK VCADDQKFEV 1260 KSEVASAGNL FSETKTNLTL DNATEGHQSV TEKAVPLKLQ DSKKTSHGLH LISAESALKN 1320 QLGQATHRIV PGRPFSAFTT SQKATSSTHI SKPRTWHRNA NSSVSPLPVS TLPPQRQLPQ 1380 RNGKLESNSY VRKGNTLVRR RATIAAVPQI SQGLSSSVHQ LNFSGIDGLK KNAGSDSRVD 1440 IKNPPRTGGL NASSDRPPAP LPSGVKMSAS AAVSSGIPTS SPLAEPLLSD ISGTKSDPMN 1500 CSETKDAEGS VKDSLATSDT QEYHSGPVNN LHDGNLASSN MKKVIYVKRK LNQLVASSSN 1560 PSDLSVHNAD KNQPSDGYYK RRKHQLIRSS LECNGKDTVL LPTDNINSGE QKARKVIPSR 1620 TFNKKRSLKA VARMSKKNSL VWTPSGSQSS NNNGSSYDHQ KVLPQLFPWK RARYWRTVMQ 1680 SQASNFNYSS SSTISKKLLL SRMRDTVYTR STHGFSLRKY KVLSVGGSSL KWSKSIESRS 1740 KKVNEEATRA VAEVEKKKRE HNGAACTSSG SKIRNSPGKR IFRIGSVRYK MDPSRRTLKR 1800 ISDDESSKSV VLNPETNAKR SYVPRRLVIG NDEYVRIGNG NQLIRDPKKR TRILASERVR 1860 WSLHTARQRL AKKRKYCQFF TRFGKCNKDD GKCPYIHDSS KIAVCTKYLN GLCSNPNCRL 1920 THKVIPERMP DCSFFLQGLC TNKNCSYRHV NVNPKASTCE GFLKGYCADG NECRKKHSYV 1980 CQTFEETGTC PQGPKCKLHH PKKRMKGKIK KRSREHRNGW GRYFVSKDVG VSEPVTASAK 2040 HCAQNGDDIF GNDFVSINVS DEEAGESNNP PEQTTFYDSD PSELDLDDLD ELIKPVRLLN 2100 KMKTNIY

Sequence ? help Back to Top

Protein Sequence Length: 2107 aa Download sequence

MVVEIDLSFL DHEKLTVYPG LRWESETAGQ DKTKLRKLRT KTKKKIRRRR RRKKTKKSRE  60
PNQPEIPDLS LSSWTSLSTF TTIQGTLLPP PPLTLISQTT LTAPPTTTTT ATLRLLLPQP  120
SPHSSAHNPP PPSNPYPLLR RHHIPKGPPS PPPHRFRSFQ NLLPRTTHRP LPLDSDRPRH  180
RLYLESGPDY RDRSRNYSPR DYDRELHKPY RRDPDGGGAR FRSEYEEQRD RRVDDGYRRR  240
SSNHETTTFR EVELQDSGSG CYDESAYEEL LKSGRRYEAY EIQRWGLERA QSEEDLYDPF  300
ELDEHDEEDR IVSDKRDYYG SESGRNSSTS RWKQIQKKSA LLRLQTPKAR DRNYSAYYDS  360
SGSGGSFRGK EQYEYEYSGH GRKDAVEEER RGGGGEERGQ QQRGGSSPLD LDVSFKSNSL  420
VAKPVRTRDE KRGSVSDMDC SESPPAKPFC ADVVNLDSLA LVSNKTSSPG KEAMKLKGQV  480
TTSGMNSQPC SVVTDDAFVK SEVETAPKGK ILHKDGKDVG SSQKSSPNVS KKTKVVKKIV  540
AKKTVKKVTN PPTSQPESKI DEPGTSTVHS LFAGTGKGET SSISDPCPND LHVLPVDKEV  600
EGSQPNVLSD EYGTVLNSCS KNIGNNSSAN LGSLSPAEIN TDQKHPLNVD TPVKGLLTIS  660
NFNSNATDSI KVASCPETGG VVDVSKSICQ SGNILLVDKV VQKESSQAML AVEGNLSSGF  720
LNSDKMHELT NVKGSEHGAE TLEKLSHQEI IVPDVGTVDA VSEQPCRYQL PTSLQNGGVV  780
EELPKAISSA ENNMAVGLSS SGETKAVRSK IGRRTRWDSD EVYVKKDKSI TVSNGGNTNS  840
FGKQSSPDCD SRSFEICATE RSPNIPKSGG DTHSVTPMIQ KKRKVKTQLD FSRISDTCVD  900
PVNVSPRKDA PDTTVSSFLK DPSHAEVSVS GVQKLDMGSQ PGNDWVSVLN GKSSVNGFSD  960
TKLSATIDAN YDTNETSPEY LKRRKVSGTH LVLTSAQTNG GPANKSTSYI QESSTHNDVP  1020
TYQADKGASS SIGSQCATSN LIPSPEEINV YLEDIMAAVS SDTVAAARDS FTNDDMKIKH  1080
QGIDSSSVSE GSGIPHMQIL CPLQSQNEDK EDGTEVMVVN NHHLDILDID GSHEKDFDVC  1140
ATNEHIMVQG ETAPCTIHSE LQPADLGINS FSTNIQSDYL CVKDKLPFVP SCLLSIANGN  1200
EVTSTNSIDE GMKSVSDTLS DTGTPETSTS ITDVHMLICN PSVIKSFDEK VCADDQKFEV  1260
KSEVASAGNL FSETKTNLTL DNATEGHQSV TEKAVPLKLQ DSKKTSHGLH LISAESALKN  1320
QLGQATHRIV PGRPFSAFTT SQKATSSTHI SKPRTWHRNA NSSVSPLPVS TLPPQRQLPQ  1380
RNGKLESNSY VRKGNTLVRR RATIAAVPQI SQGLSSSVHQ LNFSGIDGLK KNAGSDSRVD  1440
IKNPPRTGGL NASSDRPPAP LPSGVKMSAS AAVSSGIPTS SPLAEPLLSD ISGTKSDPMN  1500
CSETKDAEGS VKDSLATSDT QEYHSGPVNN LHDGNLASSN MKKVIYVKRK LNQLVASSSN  1560
PSDLSVHNAD KNQPSDGYYK RRKHQLIRSS LECNGKDTVL LPTDNINSGE QKARKVIPSR  1620
TFNKKRSLKA VARMSKKNSL VWTPSGSQSS NNNGSSYDHQ KVLPQLFPWK RARYWRTVMQ  1680
SQASNFNYSS SSTISKKLLL SRMRDTVYTR STHGFSLRKY KVLSVGGSSL KWSKSIESRS  1740
KKVNEEATRA VAEVEKKKRE HNGAACTSSG SKIRNSPGKR IFRIGSVRYK MDPSRRTLKR  1800
ISDDESSKSV VLNPETNAKR SYVPRRLVIG NDEYVRIGNG NQLIRDPKKR TRILASERVR  1860
WSLHTARQRL AKKRKYCQFF TRFGKCNKDD GKCPYIHDSS KIAVCTKYLN GLCSNPNCRL  1920
THKVIPERMP DCSFFLQGLC TNKNCSYRHV NVNPKASTCE GFLKGYCADG NECRKKHSYV  1980
CQTFEETGTC PQGPKCKLHH PKKRMKGKIK KRSREHRNGW GRYFVSKDVG VSEPVTASAK  2040
HCAQNGDDIF GNDFVSINVS DEEAGESNNP PEQTTFYDSD PSELDLDDLD ELIKPVRLLN  2100
KMKTNIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	54	KTKKKIRRRRRRKK
2	43	56	KTKKKIRRRRRRKK
3	44	52	KKIRRRRRR
4	47	52	RRRRRR
5	47	53	RRRRRRK
6	48	54	RRRRRRK
7	49	57	KKIRRRRRR