PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0298011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 228aa    MW: 25583.4 Da    PI: 6.2507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0298011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-17654254
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                            +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a   ++
  RcHm_v2.0_Chr6g0298011  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQASILMN 54
                            89****999.**********8.....334********************976665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAS ILMNGQNAKT  60
NFPNNNPPSD DQETKPTDHL PHGHQLPWDP KELAELLSSK LKKCCKDPSP SLTCLRLDND  120
NSHIGVWQKR PAGSRASSNW VMRIELGKKE KQYNTTVIEN EGSTSSPSYL ISQSSSAGSI  180
TNEAGIAIEE ADEDHGEEDK LAMQMIEELL NWNSYPIPSP TSNVQEGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-60ERF family protein