PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0298241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 353aa    MW: 39314.7 Da    PI: 4.4472
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0298241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.7e-07287333753
                             --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                             ++k  l++Le+++++++ p+ +    + + ++L+ +++  WF  +R 
  RcHm_v2.0_Chr6g0298241 287 LKKVHLDTLERVYRRTKRPTNAIVSSIVHVTNLPRKRIVKWFEEKRS 333
                             5677899************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MAFASALNAP NGLHRLPSSR HETTRTGPAS LVLPRHLPAR YSSTLAFALR KNHRAAVTSA  60
QPKLKKKSAA KNEEDEVDGD AIDALFSLLE EDLRNDGVSF DDDGEDDEIS EEDLARLEEE  120
LAEAFGAVDE DEDEDEEEEE DDEDGDGDVD VVQSDATEEE EEDEEEDDEV EVAVKLKTWQ  180
FRRLASALKV GRRKTSIKAL AAELCLDRAL VLQMLRDPPP NLLMLSAALP DVPALKKSLP  240
EPKPVETVVE TTVETGVEPT TDTAAVDTAV KVPVHVRQQK FSGQKRLKKV HLDTLERVYR  300
RTKRPTNAIV SSIVHVTNLP RKRIVKWFEE KRSEEGVPDS RRPYQPSAPT TVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.17e-60HB-other family protein