PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0299611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 232aa    MW: 26488.6 Da    PI: 8.5644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0299611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.5e-162751998
                            -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                            p  f+++  g +++  + +l+ ++g+sW+v l  + + ++ ++ kGW++Fvk + L+egDf+vF+++g+ +f   v++++
  RcHm_v2.0_Chr6g0299611  2 PTAFVDKLRGTPPC--KCVLRGPNGQSWNVAL--EERESGLFFCKGWRKFVKYHCLEEGDFLVFHYTGKLKF--DVTIYD 75
                            78899999888888..79**************..999999*************************9885555..777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MPTAFVDKLR GTPPCKCVLR GPNGQSWNVA LEERESGLFF CKGWRKFVKY HCLEEGDFLV  60
FHYTGKLKFD VTIYDESACE MDLEVSKRRS LADGSSDQVM SGKAVIEETP TGLTVFQSRN  120
SCFMKTLETF RRYDLTIPQK IVKAEGLKGH MSLTLRDPEE RSRIVETDVT VDKRLKLTKG  180
WCQGCREFNI SIGDKVVFEF VKPNVIQLHI FRGKDVLLSG PKVVDSSNYR QI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-15B3 family protein