PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0299711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 280aa    MW: 30657.8 Da    PI: 6.863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0299711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023107129123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C + F ++  L  H++ H
  RcHm_v2.0_Chr6g0299711 107 FSCNYCQRKFYSSQALGGHQNAH 129
                             89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEPTRNVVST LEAPPSPNTP LQDPNESKKK LVILEDQEEE EIEEVNRPNT VLLLDLELSN  60
TSKDSTSNSS GFNPELNLID SLQMGGSSSE TDQSSPGDQG AAEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RQLMASTAAA AGFGDYPYFH QHNHPYFSSI ASLPLHGAYN  180
NKSLDIQVHS MIHKPGGSGI GFGSSYGNRG HKSSRPIFDQ QPTIGKLAPQ NFQTTSSSRG  240
SSTSSVGRFD MANVGWLENG SRFRSGQHEE MKNLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-41C2H2 family protein