PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0300071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 330aa    MW: 36466.6 Da    PI: 7.3195
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0300071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32138191255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  RcHm_v2.0_Chr6g0300071 138 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 191
                             9****************************************************7 PP
2Myb_DNA-binding47.54.1e-15139190148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r+rWTt ++  +v+av++lGg+   t+k++ + m+ k +tl ++ks++q+y+
  RcHm_v2.0_Chr6g0300071 139 RMRWTTTLHAHFVHAVQLLGGHeraTPKSVLELMNvKDLTLAHVKSHLQMYR 190
                             89************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MMYLSSNSNP IMRTTSSPLP DLSLQISPPS DHYEMGLARK ALNGDRSSTA DSTSSGSDLS  60
HENVLYHLDQ RTNYNLTSAE PEPNLSLGLE MKDIMSSSTS STPLLPRNFN HHHPQIYGRD  120
FKRSARTVMN VKRSVRAPRM RWTTTLHAHF VHAVQLLGGH ERATPKSVLE LMNVKDLTLA  180
HVKSHLQMYR TVKSTDHKGT GNEGQQIDMG LDQNPGNNNA QVNESVLPCD SEKAINSPPT  240
LLLQNPSRGS WHSARETNGS CKLSHGNSLT YSHSPSSNGT KVEEEDSGSG RQLDCSSLSS  300
SDHMYLNLEF TLGRPSGEWS MLNTLNLQMT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-65G2-like family protein