PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0300091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 248aa    MW: 27909.2 Da    PI: 8.0026
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0300091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.6e-142990257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+ +t++ +++L+elF++   r p+ e+++++  +l    +++ ++V++WF N+Ra+ek+
  RcHm_v2.0_Chr6g0300091 29 CTRWIPTTDHIRILKELFYNkgFRSPTIEQIQRICLQLkwydKIEFKNVYFWFVNQRAREKQ 90
                            58*****************8678*************************************97 PP
2Wus_type_Homeobox78.87.1e-262892265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW Pt++ i+iL+el++ +G r+P+ e+iqri  +L+ y kie kNV++WF N++aRe+qk+
  RcHm_v2.0_Chr6g0300091 28 SCTRWIPTTDHIRILKELFYnKGFRSPTIEQIQRICLQLKWYDKIEFKNVYFWFVNQRAREKQKK 92
                            689**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MEPQNQHPTE DGSNKAVGSS ANMLRRKSCT RWIPTTDHIR ILKELFYNKG FRSPTIEQIQ  60
RICLQLKWYD KIEFKNVYFW FVNQRAREKQ KKRSTSDVHV PMQRSGLVGD DNVTNWKHED  120
HYINFGSSAP ASASSAGVMI AFNGQMGNYG GYGSMNMEKS ARDCSISAGG ETSSTFFDMN  180
VEQTFMEQRG EDHQEIETLS LFPMHGEDIF GNMKTTSDGG RGHGGGSYIS LELSLSCEGK  240
AGKSFRSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219226GGRGHGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-24WOX family protein