PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0300521

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 379aa MW: 42360.9 Da PI: 6.9607

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0300521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.5	9.4e-18	14	120	7	128
NAM 7 FhPtdeel.vveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 h tdeel + +L+k ++g++ ++ +vi+ v+ y++ P++Lp + wy ++++k t+ gyW+ + + ++ RcHm_v2.0_Chr6g0300521 14 LHCTDEELrMFTFLQKLINGSPPPT-NVINGVNPYQYLPSNLP-----PGSLWYLIRSNESK---------DTNFGYWRPKEEACQI 85 6789*966789999999999999.99**********9.....45678776665554.........5789******** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g ++tL fy+grap+ +kt+Wvm+ey + RcHm_v2.0_Chr6g0300521 86 FS-DSTITGWRTTLEFYEGRAPHEQKTNWVMQEYWI 120 .999****************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MHPQAALLPA DIGLHCTDEE LRMFTFLQKL INGSPPPTNV INGVNPYQYL PSNLPPGSLW 60 YLIRSNESKD TNFGYWRPKE EACQIFSDST ITGWRTTLEF YEGRAPHEQK TNWVMQEYWI 120 TYEKVSENSK TKEASLLCRV QSIGAEPKSN CKNLEKKVTS DVANHFTHLV VPLVEKRTGH 180 ASTSKPQVIK DNETGTLTVT ERLPDHQIEI MPETEIDFPF GDDYIELLDL DRPASFSSSS 240 DSSCLTISSD ECFDSLALLE ELEPKTSPDR ANKNAGCKFS ISVCQRPDEL VMYAAAASSG 300 SLNKSPSEER IKSHSSIPSS TVCVKSKEKT TVKLSRNQKP DQRNEGFSNS HTTTPPAGKK 360 ATVVKTKKLK KKYLCCLPC

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MHPQAALLPA DIGLHCTDEE LRMFTFLQKL INGSPPPTNV INGVNPYQYL PSNLPPGSLW  60
YLIRSNESKD TNFGYWRPKE EACQIFSDST ITGWRTTLEF YEGRAPHEQK TNWVMQEYWI  120
TYEKVSENSK TKEASLLCRV QSIGAEPKSN CKNLEKKVTS DVANHFTHLV VPLVEKRTGH  180
ASTSKPQVIK DNETGTLTVT ERLPDHQIEI MPETEIDFPF GDDYIELLDL DRPASFSSSS  240
DSSCLTISSD ECFDSLALLE ELEPKTSPDR ANKNAGCKFS ISVCQRPDEL VMYAAAASSG  300
SLNKSPSEER IKSHSSIPSS TVCVKSKEKT TVKLSRNQKP DQRNEGFSNS HTTTPPAGKK  360
ATVVKTKKLK KKYLCCLPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-17	NAC family protein