PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0301111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 102aa    MW: 11584.8 Da    PI: 9.4867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0301111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08551246
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                            g+WT    + + +a + + ++   +W+  ar +g g+t++++k ++  
  RcHm_v2.0_Chr6g0301111  5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKTAEEVKRHYER 51
                            89********************************.**********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK TAEEVKRHYE RLVEDVNRIE  60
SGEVPLPNYT RSSKSGSTGS NRSAYTNSMD IEDQRFKSLK LQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-35MYB_related family protein