PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0301221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 99aa    MW: 11224.6 Da    PI: 10.1919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0301221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091356344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   +++ +a + + ++   +W+ +a+ +g g++++++k ++
  RcHm_v2.0_Chr6g0301221 13 SWTPKQNKRFEKALAVYDKDtqdRWHNVAKAVG-GKSAEEVKRHY 56
                            7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
MASLSSSRNS NSSWTPKQNK RFEKALAVYD KDTQDRWHNV AKAVGGKSAE EVKRHYEILV  60
QDLMHIESGQ VAIPNYRATG SSSRGIADYE QRLMKNLKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-43MYB_related family protein