PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0301871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 147aa    MW: 16407.8 Da    PI: 8.5017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0301871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.3e-1747131496
                             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                              ++ps+v +  +l lp++f++ + +++++s +ltlede+g++++v +     ++ry l++GW +F+++++L +gD vv++   + ++
  RcHm_v2.0_Chr6g0301871  47 SMVPSHVYRVFWLNLPRRFCDGN-LPETKS-KLTLEDEEGNEFTVVF----IPERYGLSGGWVSFAREKKLHDGDAVVLE---QiEK 124
                             689*****************777.555555.9***************....566788***********************...4467 PP

                             E..EEEE CS
                      B3  90 felvvkv 96 
                             ++l+v++
  RcHm_v2.0_Chr6g0301871 125 TRLKVSL 131
                             7778776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MSGRKRGNAI VREEPRDASI EARSIAREAA RAHQMSLASG TPSVVISMVP SHVYRVFWLN  60
LPRRFCDGNL PETKSKLTLE DEEGNEFTVV FIPERYGLSG GWVSFAREKK LHDGDAVVLE  120
QIEKTRLKVS LLALNTNIID LTMALPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-24B3 family protein