PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302061
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26574.1 Da    PI: 8.9824
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302061genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.3e-28959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien +nrqvt+skRrng++KKA+EL vLCda+v+++++ss+gkl+e++s
  RcHm_v2.0_Chr6g0302061  9 KRIENVTNRQVTYSKRRNGLFKKANELTVLCDAKVSLLMVSSSGKLHEFIS 59
                            79***********************************************86 PP
2K-box81.32.2e-2771165195
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             yqk  g +l+++++e++q++l+k+k+ +++L+r++ h++Ge+L++L + eL++Le+++e++++ +R++K +l+ +qi++ +kk +++
  RcHm_v2.0_Chr6g0302061  71 YQKLLGIDLWKSHYETMQENLNKMKEINKSLRRQISHRVGECLNDLRFAELHSLEKEMESAVEVVRNRKLKLISNQIDTKRKKIRNA 157
                             78899999******************************************************************************* PP

                   K-box  88 qeenkaLr 95 
                              e n++L 
  RcHm_v2.0_Chr6g0302061 158 TECNRRLY 165
                             ****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MARGKIQIKR IENVTNRQVT YSKRRNGLFK KANELTVLCD AKVSLLMVSS SGKLHEFISP  60
STTTKQVYDE YQKLLGIDLW KSHYETMQEN LNKMKEINKS LRRQISHRVG ECLNDLRFAE  120
LHSLEKEMES AVEVVRNRKL KLISNQIDTK RKKIRNATEC NRRLYEYDAM EEPHYGLVDD  180
GGDYYDSAVI GYSANEDPHN VFPFRLQPSH HPNLHHGEGS SDLTTYSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-74MIKC_MADS family protein