PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0302091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 297aa MW: 32566.2 Da PI: 6.5703

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0302091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.7	8.8e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ ++ fC+ ++ lC+ C H+ H+ RcHm_v2.0_Chr6g0302091 4 QCDVCNKDDASVFCTADEAALCDGCDHRVHHAnklaskHQ 43 7****99****************9964446666676 PP
2	zf-B_box	25.8	2.2e-08	55	93	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++e ++ lfC++++ lC++C ++H+ Ht RcHm_v2.0_Chr6g0302091 55 ESPLCDICQERRAFLFCQQDRAILCRECDGSIHSAneHT 93 6789*****************************657765 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MKIQCDVCNK DDASVFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLIHP SSSKESPLCD 60 ICQERRAFLF CQQDRAILCR ECDGSIHSAN EHTQKHNRYL FTGVKLSATS TVYASSDSAA 120 AVTDLKPQPL INKKPISVSS AISSPPSVPK ISTSTSNSTK NGGNLLPYDG VGSMSSISEY 180 LTETLPGWHV EDLLDFSSNH PFGFCKADNG ATFFDDDIES NLSSFSSENM GIWVPQAPNP 240 SLQHSQMGFK ETTKEATNMN TIKANYNNNY RSLWNDDGFT VPQISPPSVG SKRSRPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-83	DBB family protein