PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0302431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bZIP

Protein Properties

Length: 541aa MW: 59174.6 Da PI: 6.5301

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0302431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.3e-10	377	435	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe kv++L++e ++L ++ +l+ + l+se+ RcHm_v2.0_Chr6g0302431 377 KRAKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQVTKLQRDSMGLTSEN 435 9***********************************************99998888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MEGSDETGRV ARPQHHLDIP NFSSGQIGLP MRQLSPSPSS ENSKRLGIPP SHPNNPMRPQ 60 LPSWQMGSQN LSSGGSAHSR SLSQPSFFSL DSLPPLSPLT SYREPSASSL SDPNSVDVSM 120 EESVVNSHAQ SLRSPVTDSN PFWAGDGLPP RRGHRRSNSD VPLGFSAVIQ SSPQLIPIGR 180 RASFDGKESL GIAKPGQLVR QGSNGDGSNN GEVMGDRKSG GEVVDDLFSA YMNLENIDKM 240 NEDKDLDSRA SGSKTNGGES SDNEVESGLN GKWSGSGFLN EKREGVKRTA GGDVARTVRH 300 CRSVSMDSYM DNLNFDEELL KPLPLGSQVG QQSPSASVDG NSAKFSMEFG SGEFNAIELK 360 KIMESEKLSE IAVSDPKRAK RILANRQSAA RSKERKMRYI VELEHKVQTL QTEATTLSAQ 420 VTKLQRDSMG LTSENNELKF RLQALEQQAQ LKDALNEALT GEVQRLRISA AELGGEGNLS 480 NRMSQQLSIN QQMLQLQQLN LYQMQQQPQQ QTQQQIMQQP QQNQLPSHQQ NGNAAKHESM 540 Q

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MEGSDETGRV ARPQHHLDIP NFSSGQIGLP MRQLSPSPSS ENSKRLGIPP SHPNNPMRPQ  60
LPSWQMGSQN LSSGGSAHSR SLSQPSFFSL DSLPPLSPLT SYREPSASSL SDPNSVDVSM  120
EESVVNSHAQ SLRSPVTDSN PFWAGDGLPP RRGHRRSNSD VPLGFSAVIQ SSPQLIPIGR  180
RASFDGKESL GIAKPGQLVR QGSNGDGSNN GEVMGDRKSG GEVVDDLFSA YMNLENIDKM  240
NEDKDLDSRA SGSKTNGGES SDNEVESGLN GKWSGSGFLN EKREGVKRTA GGDVARTVRH  300
CRSVSMDSYM DNLNFDEELL KPLPLGSQVG QQSPSASVDG NSAKFSMEFG SGEFNAIELK  360
KIMESEKLSE IAVSDPKRAK RILANRQSAA RSKERKMRYI VELEHKVQTL QTEATTLSAQ  420
VTKLQRDSMG LTSENNELKF RLQALEQQAQ LKDALNEALT GEVQRLRISA AELGGEGNLS  480
NRMSQQLSIN QQMLQLQQLN LYQMQQQPQQ QTQQQIMQQP QQNQLPSHQQ NGNAAKHESM  540
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-118	bZIP family protein