PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 433aa    MW: 47045.6 Da    PI: 6.5105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-06384406426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             ++C +f  +  C++G++C+F H+
  RcHm_v2.0_Chr6g0302461 384 KPCIYFNSSRGCRHGANCSFQHD 406
                             69********************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MRGLQKRVSW ASDVNLSQVK LFLLEDSPSQ VGLSAQDHLQ AKTSWLSHSS GTGSDDNLPP  60
GFESAHPANQ LQIDLSQIPL IRWKSPPRVV LNLAWQVVAG EESKEVESEN QRELRVLEAV  120
YPRPSAIPLN PFVDVEESSH NDVQPLSIPI TPIEEEDVAI STSSEFMVPF KIPTSSQSFL  180
SMHGTPAQSQ SSAANNRNLI ASSKPTAGTP IGVEPNVVAA ASAALGAIMN GNNEHGNMID  240
HELLIQILSN PKMIEKLVTD PQAVTRSPSM TSSDPFPLHI NNTESIAPLS TAPSSGHFYP  300
QANMGGMGHL SDQSLLSSIP VSSSPSVGPP PAKDINYYKS LIQQHGGDRH DSFPPFGNRP  360
SHHSANQESY NGYKSRESKP KIMKPCIYFN SSRGCRHGAN CSFQHDASFQ QQGSRVPEVQ  420
NAKRMKVDRE ISS