PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0305361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 529aa MW: 60443.9 Da PI: 7.7243

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0305361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.1	3.4e-11	31	107	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+ l L++ ++ +e + r++ + ++W+ v++++ + g+ rs q + kwe l +yk i +++++ s s + RcHm_v2.0_Chr6g0305361 31 WTETDLLILVNEVTAVEADCRKEFSSFQKWKIVAQNCTALGVPRSLDQYRRKWEALLHDYKIIDHWNSQS-RASASYW 107 ********************************************************************95.4444455 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MKGEQTQPEF HHSNSGGSGS RRTRSQVAPD WTETDLLILV NEVTAVEADC RKEFSSFQKW 60 KIVAQNCTAL GVPRSLDQYR RKWEALLHDY KIIDHWNSQS RASASYWALE SDRRKQFGLP 120 RSFDHELFKA IGGYEKVREN QSDTEEGEAE ADVADEYEEA VEPESKRRRR PSTQQKWSPI 180 QNPARRSMVK KPVQKPHQTR AEERHVQKPR HSHAAEKPVQ KACQTHVEDK SVQKTRPMRV 240 EEKTIVKPVQ THVAEKPGET HAEEKPRQTH EEGEPVEKAR QTHAQEKPVE KPPQTHAKEK 300 PHQTHEEESY QINAEGKPVK NPPKIQAEEN VVGKSCQSHV EGKPVEKPHQ THAEEKHVES 360 CLEAIPMENL AEEKPHQTHS QEKPVGSCLD AIPTKMAEEV PQKSCVKKKH KASEEQPGGS 420 CLEVIPMKSM AEKKTLKSSL KRKQQSTQME EKITGIEEQK QIMAMKLQWS AELIRAIVTE 480 NADHEAADEK SMKDLQADLV RRQGDQVIAC LADIVKTLNQ VHRLVQERK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MKGEQTQPEF HHSNSGGSGS RRTRSQVAPD WTETDLLILV NEVTAVEADC RKEFSSFQKW  60
KIVAQNCTAL GVPRSLDQYR RKWEALLHDY KIIDHWNSQS RASASYWALE SDRRKQFGLP  120
RSFDHELFKA IGGYEKVREN QSDTEEGEAE ADVADEYEEA VEPESKRRRR PSTQQKWSPI  180
QNPARRSMVK KPVQKPHQTR AEERHVQKPR HSHAAEKPVQ KACQTHVEDK SVQKTRPMRV  240
EEKTIVKPVQ THVAEKPGET HAEEKPRQTH EEGEPVEKAR QTHAQEKPVE KPPQTHAKEK  300
PHQTHEEESY QINAEGKPVK NPPKIQAEEN VVGKSCQSHV EGKPVEKPHQ THAEEKHVES  360
CLEAIPMENL AEEKPHQTHS QEKPVGSCLD AIPTKMAEEV PQKSCVKKKH KASEEQPGGS  420
CLEVIPMKSM AEKKTLKSSL KRKQQSTQME EKITGIEEQK QIMAMKLQWS AELIRAIVTE  480
NADHEAADEK SMKDLQADLV RRQGDQVIAC LADIVKTLNQ VHRLVQERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	3e-38	Trihelix family protein