PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0305531

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 362aa MW: 40466.5 Da PI: 8.8963

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0305531	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.8e-55	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg RcHm_v2.0_Chr6g0305531 13 LPPGFRFHPTDEELITYYLMNKISDATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTG 98 79***********************999.89***********99999****************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke++++ ++elvg+kktLvfy+grap+gek++Wvmheyr+ RcHm_v2.0_Chr6g0305531 99 KDKEIFNSaTSELVGMKKTLVFYRGRAPRGEKSNWVMHEYRI 140 **9878899*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSTGDHANKE DNLPPGFRFH PTDEELITYY LMNKISDATF TGRAIADVDL NKCEPWELPA 60 KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSATSE LVGMKKTLVF 120 YRGRAPRGEK SNWVMHEYRI HAKSSFRPSK SFKNVFVLEL YDEWVICRVF QKSAGIKKYP 180 PSNQSSSSSR AANPYNLELI GPSVNVVQSP IMQVGHEHQF PNYGRNYMTN AEMAELSRVL 240 RGGGIATGST SSPMNLPLLQ PQFNYPNIGG GGFTISGLNL NLGGPSTHSN LRPMPPLHQP 300 HQAMNHEQDV ANSSMMSSTS GAVGQDQAGY GIDMNNGNVP AGNRYMNVVD HCVDLDNYWP 360 SY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSTGDHANKE DNLPPGFRFH PTDEELITYY LMNKISDATF TGRAIADVDL NKCEPWELPA  60
KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSATSE LVGMKKTLVF  120
YRGRAPRGEK SNWVMHEYRI HAKSSFRPSK SFKNVFVLEL YDEWVICRVF QKSAGIKKYP  180
PSNQSSSSSR AANPYNLELI GPSVNVVQSP IMQVGHEHQF PNYGRNYMTN AEMAELSRVL  240
RGGGIATGST SSPMNLPLLQ PQFNYPNIGG GGFTISGLNL NLGGPSTHSN LRPMPPLHQP  300
HQAMNHEQDV ANSSMMSSTS GAVGQDQAGY GIDMNNGNVP AGNRYMNVVD HCVDLDNYWP  360
SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-110	NAC family protein