PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0306191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 249aa    MW: 27028.9 Da    PI: 5.1346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0306191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1960110155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  RcHm_v2.0_Chr6g0306191  60 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 110
                             68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MSSTTETQLG SETDSSSSSS SPPSSPASSG PVNPNKPSSP ESDTKNNKKI KRDRDSSKHP  60
VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG NSAILNFPEL  120
SNSLPRPASL APRDVQAAAS KAAQMHQFDS KPSMSTTSSS SSLCSLVSAI DNLSTESEEL  180
SEIVQLPSLG TSYESYELRN EFLLVDSAED EWVYPPPWLQ QMGDCGVYLC GGLGSSSNST  240
GFEGLLWDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-72ERF family protein