PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0307001

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 252aa MW: 27857.8 Da PI: 8.5008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0307001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	37	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + RcHm_v2.0_Chr6g0307001 37 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79***************************9.*********985 PP
2	Myb_DNA-binding	54.6	2.6e-17	91	133	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ RcHm_v2.0_Chr6g0307001 91 PFSQAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MDANIAMNMC SSSTSTSDSS SSESSQPRNP NKAYRIKGPW SAEEDRVLTR LVERYGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPSVQHR PFSQAEDETI LAAHARYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRVRE PQDHQELDHQ GEGNIGNAAI EVMMMGNTTT SSASAASGRN 180 GSMDLDDPLT ELTLATPGIG GSVVSSSEQH HHHRSSSESF PPAGFWDVMR GVIAREVRDY 240 VSSSFSETSG LH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-57	MYB family protein